miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|222394794|gb|FG301001.1|FG301001 CAAATAAATGTCTTTTTTTGTTATTGTTTTTTTTTTTCTTTATTATTTGTTTCTGTCTTCTATTTTCGTATTTTGTGCCA
GTAATTTTTCAATCAACATTTATTAATTTATTGTCTCTCTCTCTCTCTCTTTAAAAGTTAAACAACATAAATAAATTTTA
ATTTTAAAATACACTCTCTTTTTCTCTACGTGTGCGTTTCAACAGAAAAAAAGAATTCGCATTGAGTGCAAATGTTTGTG
TGCATGTGTGTGTGTGTTTAATTTCCTAAAATTAAATTATACATATGTATGCACTAGAGTTATATCATTTTAGTCTTATA
GATAATAATTAAATTGTACGCAATGATTTCAATTTACATTCCTTTAAGGATTTTGCGGAAACGATCCAAAACAATGTTGG
CATGTTTTTCGGTAAAGATGAAAGCTGGTCTGAAACGTATAGACAAATCACCGCAGCCACCAGTTTGTAGACCATGCAAT
TTGAATTTATTGATAATGTCGTCACGAGTTTGGGAGTTCTTGCAGTTGAAAGCTAAGTAGGTACCACGACCTCTGGTTGA
GTTGATAATGGTGGGGAATTCCTTTTCTAATTCCAAAAGGCCAGATTTTAAAACCTTGCCGGATCTTTTCACTTGATCCA
ATAGGTTTTCTTGCTTGATGGTCTTAAGGACTTGTTCGAGCATGATAATTTTTTGCGGGTTACCCATCCAGGTGTTGAAA
ATACAATAGGCTTCTTTGGGTCGGAAACTGGTATTGTGGAAATACTCACCCGATGCATTTTCTTCTGAAGGTAACAACAT
CTGGAGGAGATTCAAATTTGAGTGTTCGTGGCACCACTTTTTACCTTACCACCCCACCTGTTGTACTTATCATAACAAGC
CTGCCGTTGCTTTCAATGCGTGTGTCTTGAATAATTCTGGGGAGCTCCTTTGTCCCCCCCACTTGAATGGTCAACTTTAA
CCAACAAAGGATATCTTTTTGGGATTTTTAACAATTCTT




Most similar to sp|P80147|GABT_PIG

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P80147|GABT_PIG 4-aminobutyrate aminotransferase, mitochondrial
           OS=Sus scrofa GN=ABAT PE=1 SV=2
          Length = 500

 Score =  140 bits (353), Expect = 1e-32
 Identities = 67/161 (41%), Positives = 102/161 (63%), Gaps = 1/161 (0%)
 Frame = -2

Query: 845 GKKWCHEHSNLN-LLQMLLPSEENASGEYFHNTSFRPKEAYCIFNTWMGNPQKIIMLEQV 669
           GK W HEH  L+    ++  S++  +G +FH   FRP   Y IFNTW+G+P K ++L +V
Sbjct: 336 GKFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLLAEV 395

Query: 668 LKTIKQENLLDQVKRSGKVLKSGLLELEKEFPTIINSTRGRGTYLAFNCKNSQTRDDIIN 489
           +  IK+E+LL     +GKVL +GLL+L+  +P  I+  RGRGT+ +F+  +   R+ +I+
Sbjct: 396 INIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTPDESIRNKLIS 455

Query: 488 KFKLHGLQTGGCGDLSIRFRPAFIFTEKHANIVLDRFRKIL 366
             +  G+  GGCGD SIRFRP  +F + HA++ L+ F  IL
Sbjct: 456 IARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDIL 496